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numberofalleles (version 1.0.1)

Compute the Probability Distribution of the Number of Alleles in a DNA Mixture

Description

The number of distinct alleles observed in a DNA mixture is informative of the number of contributors to the mixture. The package provides methods for computing the probability distribution of the number of distinct alleles in a mixture for a given set of allele frequencies. The mixture contributors may be related according to a provided pedigree.

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Version

Install

install.packages('numberofalleles')

Monthly Downloads

180

Version

1.0.1

License

GPL (>= 2)

Maintainer

Maarten Kruijver

Last Published

April 29th, 2022

Functions in numberofalleles (1.0.1)

variance_number_of_distinct_alleles

Compute the variance of the number of distinct alleles observed in a DNA mixture for a locus
pr_total_number_of_distinct_alleles

Compute the probability distribution of total number of distinct alleles in a DNA mixture
expected_number_of_distinct_alleles

Compute the expectation of the number of distinct alleles observed in a DNA mixture for a locus
var

Variance method for objects of class pf
pr_independent_alleles_ped

Compute the probability distribution of the number of independent alleles in a mixture with dropout and related contributors
numberofalleles

numberofalleles
read_allele_freqs

Read allele frequencies in FSIgen format (.csv)
pr_number_of_distinct_alleles

Compute the probability distribution of the number of distinct alleles observed in a DNA mixture for a locus
plot.pf

Plot method for objects of class pf
pr_independent_alleles

Compute the probability distribution of the number of independent alleles in a mixture with dropout
mean.pf

Mean method for objects of class pf