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o2geosocial (version 1.1.2)

toy_outbreak_short: Simulated outbreaks

Description

Second dataset used to illustrate o2geosocial. (toy_outbreak_short) is a smaller data set (75 cases), spread across different Census tracks in Ohio (population and location of each region taken from https://www.census.gov/geographies/reference-files/2010/geo/2010-centers-population.html). The list contains the following:

Usage

toy_outbreak_short

Arguments

Format

An object of class list of length 3.

Author

Alexis Robert alexis.robert@lshtm.ac.uk

Details

  • $cases: A data table summarising the epidemiological features of the 75 cases. It contains the ID, state, onset date, genotype, Census tract, age group, import status, cluster, generation and infector of the cases.

  • $dt_regions: A data table containing the ID, population, longitude and latitude of each region. Should be used to compute the distance matrix, using the package geosphere.

  • $age_contact: A matrix indicating the number of contacts between age groups

Examples

Run this code
data("toy_outbreak_short")
names(toy_outbreak_short)
toy_outbreak_short

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