occTest (version 0.1.1)

.cc_outl_occTest: Identify geographic outliers based on methods from CoordinateCleaner package

Description

own version of coordinate cleaner geographic outliers

Usage

.cc_outl_occTest(
  x,
  lon = "decimallongitude",
  lat = "decimallatitude",
  species = "species",
  method = "quantile",
  mltpl = 5,
  tdi = 1000,
  value = "clean",
  sampling_thresh = 0,
  verbose = TRUE,
  min_occs = 7,
  thinning = FALSE,
  thinning_res = 0.5
)

Value

a clean data.frame

Arguments

x

Data.frame of species occurrences

lon

character. Column name in x with decimal longitude values

lat

character. Column name in x with decimal latitude values

species

character. Species name.

method

character. Quantile by default

mltpl

integer. Multiplication factor. Default to 5

tdi

numeric. Default to 1000

value

character. Type of output. Default to 'clean'

sampling_thresh

numeric. Sampling threshold. Defaults to 0

verbose

logical. Should output messages be printed. Default to TRUE

min_occs

integer. Minimum number of occurrences. Defaults to 7

thinning

logical. Should thinning be performed? Defaults to FALSE

thinning_res

double. Thinnning resolution. Defaults to 0.5

Author

A Zizka (original function) Josep M Serra-Diaz (adaptation to occTest [e-mail])