plot,occumbFit-method

Applies <a href="https://cran.r-project.org/package=jagsUI">jagsUI</a>'s
plot method to an <code>occumbFit</code> object to draw trace plots
and density plots of MCMC samples of model parameters.

Fits community site occupancy models to environmental DNA
metabarcoding data collected using spatially-replicated survey design.
Model fitting results can be used to evaluate and compare the effectiveness
of species detection to find an efficient survey design.
Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>,
Fukaya and Hasebe (2025) <doi:10.1002/1438-390X.12219>.

Keiichi Fukaya

occumb

Site Occupancy Modeling for Environmental DNA Metabarcoding

Ken Kellner

Mika Takahashi

plot,occumbFit-method function

<dl><dt>x</dt>
<dd>An <code>occumbFit</code> object.</dd>
<dt>y</dt>
<dd><code>NULL</code></dd>
<dt>...</dt>
<dd>Additional arguments passed to the plot method for
<a href="https://cran.r-project.org/package=jagsUI">jagsUI</a> object.</dd></dl>

Arguments

Applies <a href='https://cran.r-project.org/package=jagsUI'>jagsUI</a>'s
plot method to an <code>occumbFit</code> object to draw trace plots
and density plots of MCMC samples of model parameters.

Plot method for occumbFit class. — plot,occumbFit-method

<dl>

<dt>x</dt>
<dd>An <code>occumbFit</code> object.</dd>


<dt>y</dt>
<dd><code>NULL</code></dd>


<dt>...</dt>
<dd>Additional arguments passed to the plot method for
<a href='https://cran.r-project.org/package=jagsUI'>jagsUI</a> object.</dd>

</dl>

plot,occumbFit-method: Plot method for occumbFit class.

Description

Usage

Value

Arguments