oce (version 0.8-9)

plot.ctd: Plot seawater CTD data

Description

Plot CTD data

Usage

## S3 method for class 'ctd':
plot(x, which=1:4, 
     eos=getOption("eos", default='unesco'),
     ref.lat=NaN, ref.lon=NaN, 
     grid=TRUE, col.grid="lightgray", lty.grid="dotted",
     coastline="coastlineWorld",
     Slim, Tlim, plim, densitylim, N2lim,
     dpdtlim, timelim,
     lonlim, latlim, span,
     latlon.pch=20, latlon.cex=1.5, latlon.col="red",
     cex=1, cex.axis=par('cex.axis'),
     pch=1,
     useSmoothScatter=FALSE,
     keepNA=FALSE,
     type='l',
     adorn=NULL,
     mgp=getOption("oceMgp"),
     mar=c(mgp[1]+1.5,mgp[1]+1.5,mgp[1]+1.5,mgp[1]+1),
     inset=FALSE,
     debug=getOption("oceDebug"),
     ...)

Arguments

x

A ctd object, e.g. as read by read.ctd, or a list containing items named salinity and temperature.

which

list of desired plot types.

• which=1orwhich="salinity+temperature"gives a combined profile of temperature and salinity
• which=2orwhich="density+N2"gives a combined profi

eos

either "unesco" or "teos". If the latter, then the computer must have the TEOS library installed; see teos. The effect of using "teos" is to us ``absolute sa

ref.lat

Latitude of reference point for distance calculation

ref.lon

Longitude of reference point for distance calculation

grid

Set TRUE to get a grid on all plots.

col.grid

colour for the grid.

lty.grid

line type for grid.

coastline

a coastline object, or a character string naming one. There are several built-in datasets: coastlineWorld (the default), coastlineMaritimes, coastlineHalifax, and coastlineSLE

Slim

optional limits of salinity axes

Tlim

optional limits of temperature axes

plim

optional limits of pressure axes

densitylim

optional limits of density axis

N2lim

optional limits of $N^2$ axis

dpdtlim

optional limits of dP/dt axis

timelim

optional limits of delta-time axis

lonlim

optional limits of longitude axis of map (ignored if no map plotted)

latlim

optional limits of latitude axis of map (ignored if no map plotted)

span

optional span of map, in km (ignored unless a map is being drawn)

latlon.pch

pch for sample location (ignored if no map plotted)

latlon.cex

cex for sample location (ignored if no map plotted)

latlon.col

col for sample location (ignored if no map plotted)

cex

size to be used for plot symbols (see par)

cex.axis

size factor for axis labels (see par)

pch

code for plotting symbol (see par).

useSmoothScatter

boolean, set to TRUE to use smoothScatter instead of plot to draw the plot.

keepNA

flag indicating whether to keep NA values in linegraphs, which will yield breaks in the lines.

type

type of plot to draw, using the same scheme as plot.

adorn

list of expressions to be executed for the panels in turn, e.g. to adorn the plots. If the number matches the number of panels, then the strings are applied to the appropriate panels, as they are drawn from top-left to bottom-right. If onl

mgp

3-element numerical vector to use for par(mgp), and also for par(mar), computed from this. The default is tighter than the R default, in order to use more space for the data and less for the axes.

mar

value to be used with par("mar").

inset

set to TRUE for use within plotInset. The effect is to prevent the present function from adjusting margins, which is necessary because margin adjustment is the basis for the meth

debug

set to a positive value to get debugging information during processing.

...

optional arguments passed to plotting functions. A common example is to set df, for use in swN2 calculations.

Details

Creates a multi-panel summary plot of data measured in a CTD cast. The panels are controlled by the which argument. Normally, 4 panels are specified with the which, but it can also be useful to specify less than 4 panels, and then to draw other panels after this call.

If only 2 panels are requested, they will be drawn side by side.

If more than one panel is drawn, then on exit from plot.ctd, the value of par will be reset to the value it had before the function call. However, if only one panel is drawn, the adjustments to par made within plot.ctd are left in place, so that further additions may be made to the plot.

See Also

The documentation for ctd-class explains the structure of CTD objects, and also outlines the other functions dealing with them.

Examples

library(oce)
data(ctd) 
plot(ctd)
plot(ctd, which=c(1,2,3,5), coastline="coastlineHalifax")