oce (version 0.9-13)

plot.lobo: Plot lobo data

Description

Plot a summary diagram for lobo data.

Usage

## S3 method for class 'lobo':
plot(x, 
     which=c(1,2,3), 
     adorn=NULL,
     mgp=getOption("oceMgp"), 
     mar=c(mgp[2]+1, mgp[1]+1, 1, mgp[1]+1.25),
     debug=getOption("oceDebug"),
     ...)

Arguments

x

A lobo object, e.g. as read by read.lobo.

which

A vector of numbers or character strings, indicating the quantities to plot. These are stacked in a single column. The possible values for which are as follows: 1 or "temperature" for a time serie

adorn

list of expressions to be executed for the panels in turn, e.g. to adorn the plots. If the number matches the number of panels, then the strings are applied to the appropriate panels, as they are drawn from top-left to bottom-right. If onl

mgp

3-element numerical vector to use for par(mgp), and also for par(mar), computed from this. The default is tighter than the R default, in order to use more space for the data and less for the axes.

mar

value to be used with par("mar").

debug

a flag that turns on debugging. Set to 1 to get a moderate amount of debugging information, or to 2 to get more.

...

optional arguments passed to plotting functions.

Value

• None.

Details

Creates a summary plot for a lobo dataset.

References

http://lobo.satlantic.com/ and http://www.mbari.org/lobo/

See Also

The documentation for lobo-class explains the structure of LOBO objects, and also outlines the other functions dealing with them.

Examples

library(oce)
data(lobo)
plot(lobo)
# illustrate adornment
plot(lobo,
     adorn=expression({abline(v=as.POSIXct("2009-03-23 00:00:00"), col="red")}))