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odseq (version 1.0.2)

Outlier detection in multiple sequence alignments

Description

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

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Version

Version

1.0.2

License

MIT + file LICENSE

Maintainer

Jose Jimenez

Last Published

February 15th, 2017

Functions in odseq (1.0.2)

odseq-package

odseq
odseq

Outlier detection in a multiple sequence alignment
odseq_unaligned

Outlier detection provided a distance/similarity matrix of sequences.
odmix

Gaussian mixture modelling of distances in a multiple sequence alignment.
seqs

PFAM plus random data.