ohtadstats (version 2.1.1)

dheatmap: Heatmap Plot

Description

Plots a matrix of D statistics, output from dwrapper, as a heatmap.

Usage

dheatmap(d_matrix, colors = c("white", "lightblue", "blue", "darkblue",
  "black"), mode = "linear", tick.labels = TRUE, nbins = 5)

Arguments

d_matrix

A matrix of D statistics or a matrix of D statistic ratios.

colors

An optional color vector. Optionally modify the color scheme of the heatmap. If mode = 'binned', must be of length 5.

mode

A string indicating desired coloring scheme. The option "linear" scales colors linearly, "truncated" truncates values greater than 1, and "binned" returns a discretedistribution of colors.

tick.labels

A logical indicating whether or not marker labels should be drawn.

nbins

An integer specifying the number of bins to be used. Only relevent if mode is "binned".

Value

A color plot

Details

The d_matrix input should be one of the matrices output by dwrapper. Options are d2it_mat, d2is_mat, d2st_mat, dp2st_mat, dp2is_mat, npops_mat, ratio1, and ratio2. More customized plots can be developed using the "levelplot" package.

Examples

# NOT RUN {
data(miyashita_langley_data)
miyashita_langley_subset <- miyashita_langley_data[,1:15]
ml_results <- dwrapper(miyashita_langley_subset)
dheatmap(ml_results[["d2it_mat"]], mode = 'linear')

# }
# NOT RUN {
data(miyashita_langley_data)
ml_results <- dwrapper(miyashita_langley_data)
dheatmap(ml_results[["d2it_mat"]], mode = 'linear')
# }
# NOT RUN {
# }