match_species

Match species names to their GBIF backbone ids using <code>rgbif::name_backbone_checklist()</code>.

Interface with the One Health VBD (vector-borne disease) Hub <https://vbdhub.org/> and related repositories (VectorByte <https://www.vectorbyte.org>, GBIF <https://www.gbif.org> and AREAdata <https://pearselab.github.io/areadata/>) directly to find, download, and subset vector-borne disease data.

Francis Windram

ohvbd

One Health VBD Hub

match_species function

<dl><dt>speciesnames</dt>
<dd>a vector of species names to match to the GBIF backbone.</dd>
<dt>exact</dt>
<dd>whether to only return exact species matches.</dd>
<dt>returnids</dt>
<dd>return the GBIF taxon ids only (otherwise return the full lookup dataframe).</dd>
<dt>omit</dt>
<dd>omit missing taxon ids (inactive when <code>returnids = FALSE</code>).</dd></dl>

Arguments

Author

Match species names to their GBIF backbone ids — match_species

<dl>

<dt>speciesnames</dt>
<dd>a vector of species names to match to the GBIF backbone.</dd>


<dt>exact</dt>
<dd>whether to only return exact species matches.</dd>


<dt>returnids</dt>
<dd>return the GBIF taxon ids only (otherwise return the full lookup dataframe).</dd>


<dt>omit</dt>
<dd>omit missing taxon ids (inactive when <code>returnids = FALSE</code>).</dd>

</dl>

match_species: Match species names to their GBIF backbone ids

Description

Usage

Value

Arguments

Author

Examples