oligo (version 1.36.1)

oligoPLM-class: Class "oligoPLM"

Description

A class to represent Probe Level Models.

Objects from the Class

Objects can be created by calls of the form fitProbeLevelModel(FeatureSetObject), where FeatureSetObject is an object obtained through read.celfiles or read.xysfiles, representing intensities observed for different probes (which are grouped in probesets or meta-probesets) across distinct samples.

References

Bolstad, BM (2004) Low Level Analysis of High-density Oligonucleotide Array Data: Background, Normalization and Summarization. PhD Dissertation. University of California, Berkeley.

See Also

rma, summarize

Examples

## TODO: review code and fix broken
if (require(oligoData)){
  data(nimbleExpressionFS)
  fit <- fitProbeLevelModel(nimbleExpressionFS)
  image(fit)
  NUSE(fit)
  RLE(fit)
}