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oligoClasses (version 1.34.0)

SummarizedExperiment-methods: Methods for RangedSummarizedExperiment objects

Description

Methods for RangedSummarizedExperiment.

Usage

"baf"(object) "chromosome"(object,...) "isSnp"(object, ...) "lrr"(object)

Arguments

object
...
ignored

Details

baf and lrr are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

chromosome returns the seqnames of the rowRanges.

isSnp returns a logical vector for each marker in rowRanges indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

See Also

RangedSummarizedExperiment