isSnp-methods

isSnp

isSnp,character-method

isSnp,SnpSet-method

isSnp,gSet-method

isSnp,GenomeAnnotatedDataFrame-method


 ~~ Methods for function <code>isSnp</code> in package <span class="pkg">oligoClasses</span> ~~


methods

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Benilton Carvalho

oligoClasses

Classes for high-throughput arrays supported by oligo and crlmm

isSnp-methods function

<dl> Return an indicator for whether the marker is polymorphic (value 1) or
  nonpolymorphic (value 0). <dt><code>signature(object = "character", pkgname = "character")</code></dt><dd>
  Return an indicator for whether the vector of marker identifiers in
  <code>object</code> is polymorphic.  <code>pkgname</code> must be one of the
  supported annotation packages specific to the platform.
</dd> <dt><code>signature(object = "eSet", pkgname = "ANY")</code></dt><dd>
  If 'isSnp' is included in <code>fvarLabels(object)</code>, an indicator for
  polymorphic markers is returned. Otherwise, an error is thrown.
</dd> <dt><code>signature(object = "GenomeAnnotatedDataFrame", pkgname =
  "ANY")</code></dt><dd> Accessor for indicator of whether the marker is polymorphic.
  If annotation was not available due to a missing or non-existent
  annotation package, the value returned by the accessor will be a
  vector of zero's. </dd> </dl> 

Methods

~~ Methods for function <code>isSnp</code> in package <pkg>oligoClasses</pkg> ~~

isSnp-methods: Methods for Function isSnp in package oligoClasses~~

Description

Arguments

Methods