oligoClasses (version 1.34.0)

oligoSet: An example instance of oligoSnpSet class

Description

An example instance of the oligoSnpSet class

Usage

data(oligoSetExample)

Source

Created from the simulated locusLevelData provided in this package.

See Also

locusLevelData

Examples

	## Not run: 
# 		## 'oligoSetExample' created by the following
# 		data(locusLevelData)
# 		oligoSet <- new("oligoSnpSet",
# 				copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100),
# 				call=locusLevelData[["genotypes"]],
# 				callProbability=locusLevelData[["crlmmConfidence"]],
# 				annotation=locusLevelData[["platform"]],
# 				genome="hg19")
# 		oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ]
# 		oligoSet <- oligoSet[chromosome(oligoSet) < 3, ]
# 	## End(Not run)
	data(oligoSetExample)
	oligoSet