omopgenerics (version 1.4.1)

newCdmReference: cdm_reference objects constructor

Description

cdm_reference objects constructor

Usage

newCdmReference(
  tables,
  cdmName,
  cdmVersion = NULL,
  .softValidation = getOption("og.cdm_reference.softvalidation", FALSE)
)

Value

A cdm_reference object.

Arguments

tables

List of tables that are part of the OMOP Common Data Model reference.

cdmName

Name of the <cdm_reference> object.

cdmVersion

Version of the OMOP Common Data Model. Supported versions are "5.3" and "5.4".

.softValidation

Whether to perform a soft validation of consistency. If set to FALSE, non overlapping observation periods are ensured.

Examples

# \donttest{
library(omopgenerics)
library(dplyr, warn.conflicts = FALSE)

cdmTables <- list(
  "person" = tibble(
    person_id = 1, gender_concept_id = 0, year_of_birth = 1990,
    race_concept_id = 0, ethnicity_concept_id = 0
  ) |>
    newCdmTable(newLocalSource(), "person"),
  "observation_period" = tibble(
    observation_period_id = 1, person_id = 1,
    observation_period_start_date = as.Date("2000-01-01"),
    observation_period_end_date = as.Date("2023-12-31"),
    period_type_concept_id = 0
  ) |>
    newCdmTable(newLocalSource(), "observation_period")
)
cdm <- newCdmReference(tables = cdmTables, cdmName = "mock")

cdm
# }