omopgenerics (version 1.4.1)

validateConceptSetArgument: Validate conceptSet argument. It can either be a list, a codelist, a concept set expression or a codelist with details. The output will always be a codelist.

Description

Validate conceptSet argument. It can either be a list, a codelist, a concept set expression or a codelist with details. The output will always be a codelist.

Usage

validateConceptSetArgument(
  conceptSet,
  cdm = NULL,
  empty = TRUE,
  validation = "error",
  nm = deparse1(substitute(conceptSet), backtick = TRUE),
  call = parent.frame()
)

Value

A codelist object.

Arguments

conceptSet

It can be either a named list of concepts or a codelist, codelist_with_details or concept_set_expression object.

cdm

A <cdm_reference> object. If provided, concept IDs in the resulting codelist will be checked against cdm$concept. It is also needed if a concept_set_expression with descendants is provided.

empty

Whether it can be empty.

validation

How to perform validation: "error", "warning".

nm

Name to use in error messages. Defaults to the expression supplied to conceptSet.

call

Call argument passed to cli functions.

Examples

conceptSet <- list(disease_x = c(1L, 2L))
validateConceptSetArgument(conceptSet)