omu (version 1.1.2)

KEGG_gather: Gather metadata from KEGG for metabolites

Description

Method for gathering metadata from the KEGG API.

Usage

KEGG_gather(count_data)
# S3 method for cpd
KEGG_gather(count_data)
# S3 method for rxn
KEGG_gather(count_data)
# S3 method for KO
KEGG_gather(count_data)

Arguments

count_data

A metabolomics count dataframe with a KEGG identifier columns

Examples

if (FALSE) {
count_data <- assign_hierarchy(count_data = c57_nos2KO_mouse_countDF,
keep_unknowns = TRUE, identifier = "KEGG")

count_data <- subset(count_data, Subclass_2=="Aldoses")

count_data <- KEGG_gather(count_data = count_data)
}