input_formats

Defines input format parameters to apply when reading input files.

datasets

Medication adherence, defined as medication-taking behavior that aligns with the agreed-upon
treatment protocol, is critical for realizing the benefits of prescription medications.
Medication adherence can be assessed using electronic adherence monitoring devices (EAMDs),
pill bottles or boxes that contain a computer chip that records the date and time of each
opening (or “actuation”). Before researchers can use EAMD data, they must apply a series of
decision rules to transform actuation data into adherence data.
The purpose of this R package ('oncmap') is to transform EAMD actuations in the form of a raw .csv file,
information about the patient, regimen, and non-monitored periods into two daily adherence values --
Dose Taken and Correct Dose Taken.

Michal Kouril

oncmap

Analyze Data from Electronic Adherence Monitoring Devices

Meghan McGrady

Mara Constance

Kevin Hommel

input_formats function

One input format per row described by the following variables:<dl>
 <dt><code>skip_header_lines</code></dt>
<dd>double Number of lines to skip before reading data</dd> <dt><code>header_line_patientid</code></dt>
<dd>character Regex to apply to the header line to extract patient ID</dd> <dt><code>patientid_filename</code></dt>
<dd>logical Patient id is embedded in the filename</dd> <dt><code>deviceid_header</code></dt>
<dd>character Device ID column in the input data</dd> <dt><code>headers</code></dt>
<dd>character Comma separated list of expected column headers</dd> <dt><code>patientid_header</code></dt>
<dd>character Patient ID column in the input data</dd> <dt><code>datetime_header</code></dt>
<dd>character Actuation Date/Time column in the input data</dd> <dt><code>datetime_format</code></dt>
<dd>character Actuation Date/Time format</dd> <dt><code>filter</code></dt>
<dd>character Inclusion/Exclusion filter to apply on the input data</dd> <dt><code>tz_colon_fix</code></dt>
<dd>logical Fix for when TZ contains with ':'</dd>
</dl>

Format

Adherence input format definitions — input_formats

One input format per row described by the following variables:<dl>
 <dt><code>skip_header_lines</code></dt>
<dd>double Number of lines to skip before reading data</dd>

 <dt><code>header_line_patientid</code></dt>
<dd>character Regex to apply to the header line to extract patient ID</dd>

 <dt><code>patientid_filename</code></dt>
<dd>logical Patient id is embedded in the filename</dd>

 <dt><code>deviceid_header</code></dt>
<dd>character Device ID column in the input data</dd>

 <dt><code>headers</code></dt>
<dd>character Comma separated list of expected column headers</dd>

 <dt><code>patientid_header</code></dt>
<dd>character Patient ID column in the input data</dd>

 <dt><code>datetime_header</code></dt>
<dd>character Actuation Date/Time column in the input data</dd>

 <dt><code>datetime_format</code></dt>
<dd>character Actuation Date/Time format</dd>

 <dt><code>filter</code></dt>
<dd>character Inclusion/Exclusion filter to apply on the input data</dd>

 <dt><code>tz_colon_fix</code></dt>
<dd>logical Fix for when TZ contains with ':'</dd>


</dl>

input_formats: Adherence input format definitions

Description

Usage

Arguments

Format