oncmap (version 0.1.5)

read_input: Read input file

Description

Read input file

Usage

read_input(
  infile,
  include_formats = NULL,
  exclude_formats = NULL,
  formats_def = NULL,
  infile_data_output = FALSE
)

Value

A list of output variables

• format - Detected input format name

• format_def - Detected format definition

• patient_id - Extracted patient_id

• device_id - Extracted device_id

• data - Extracted timestamps

• log - Log of the format detection

• infile_data - Raw input data

Arguments

infile

Input CSV file name

include_formats

Which formats to include in checking

exclude_formats

Which formats to exclude from checking

formats_def

New formats definition

infile_data_output

Include infile data frame in the result

Examples

  input_file <- system.file('extdata', 'sample-data-ecap2.csv', package = 'oncmap')
  input <- read_input("tests/testthat/ecap1.csv")