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oncomodel (version 1.0)
Maximum likelihood tree models for oncogenesis
Description
Computing probabilistic tree models for oncogenesis based on genetic data using maximum likelihood.
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Version
Version
1.0
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Install
install.packages('oncomodel')
Monthly Downloads
11
Version
1.0
License
GPL (>= 2)
Maintainer
Anja von Heydebreck
Last Published
October 29th, 2012
Functions in oncomodel (1.0)
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boot.conf.values
Bootstrap Confidence Values
comp.freq
Compare Model Probabilities to Frequencies
MLparameters
Compute Maximum Likelihood Parameters
MLtopology
Compute Maximum Likelihood Tree Topology
leafset.prob2
Probability of a Set of Leaves
oncomodel-package
Maximum likelihood tree models for oncogenesis
is.tree
Compare with Tree Format
kidney
Cytogenetic Data from Kidney Carcinoma
mrca
Most Recent Common Ancestor
leafset.prob
Probability of a Set of Leaves
subtree
Subtree