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oncomodel (version 1.0)

Maximum likelihood tree models for oncogenesis

Description

Computing probabilistic tree models for oncogenesis based on genetic data using maximum likelihood.

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Version

Install

install.packages('oncomodel')

Monthly Downloads

6

Version

1.0

License

GPL (>= 2)

Maintainer

Anja von Heydebreck

Last Published

October 29th, 2012

Functions in oncomodel (1.0)

boot.conf.values

Bootstrap Confidence Values
comp.freq

Compare Model Probabilities to Frequencies
MLparameters

Compute Maximum Likelihood Parameters
MLtopology

Compute Maximum Likelihood Tree Topology
leafset.prob2

Probability of a Set of Leaves
oncomodel-package

Maximum likelihood tree models for oncogenesis
is.tree

Compare with Tree Format
kidney

Cytogenetic Data from Kidney Carcinoma
mrca

Most Recent Common Ancestor
leafset.prob

Probability of a Set of Leaves
subtree

Subtree