ondisc (version 1.0.0)

metadata_ondisc_matrix: metadata_ondisc_matrix class

Description

A metadata_ondisc_matrix stores an ondisc_matrix, along with cell-specific and feature-specific covariate matrices.

Construct a metadata_ondisc_matrix by passing an ondisc_matrix, along with its associated cell_covariates and feature_covariates.

Usage

metadata_ondisc_matrix(ondisc_matrix, cell_covariates, feature_covariates)
metadata_ondisc_matrix(ondisc_matrix, cell_covariates, feature_covariates)

Arguments

ondisc_matrix

an ondisc_matrix.

cell_covariates

a data frame storing the cell-specific covariates.

feature_covariates

a data frame storing the feature-specific covariates.

Value

a metadata_ondisc_matrix.

Slots

ondisc_matrix

an ondisc_matrix.

cell_covariates

a data frame of cell covariates.

feature_covariates

a data frame of feature covariates.

Examples

# NOT RUN {
# NOTE: You must create the HDF5 file "expressions.h5" and the RDS file
# "expressions.rds" to run this example. Navigate to the help file of
# "create_ondisc_matrix_from_mtx" (via ?create_ondisc_matrix_from_mtx),
# and execute the code in the first code block.
covariates_fp <- paste0(tempdir(), "/expressions.rds")
h5_fp <-  paste0(tempdir(), "/expressions.h5")
if (file.exists(covariates_fp) && file.exists(h5_fp)) {
covariate_odm <- readRDS(covariates_fp)
cell_covariate_matrix <- covariate_odm@cell_covariates
feature_covariate_matrix <- covariate_odm@feature_covariates
covariate_odm_copy <- metadata_ondisc_matrix(
ondisc_matrix = ondisc_matrix(h5_file = h5_fp),
cell_covariates = cell_covariate_matrix,
feature_covariates = feature_covariate_matrix)
}
# }