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oneChannelGUI (version 1.36.0)

makeSam: makeSam

Description

This function uses samtools to convert a bam file in a sam file. It assumes that the bam file was generated by TopHat. Therefore it searches for accepted_hits.bam in the folder.

Usage

makeSam()

Arguments

Details

This function uses samtools to convert a bam file in a sam file. It assumes that the bam file was generated by TopHat. Therefore it searches for accepted_hits.bam in the folder. It produces a file named accepted_hits.sam.