OpenLargefiles


 The function creates and expressionSet starting from al file containing the expresison data in a tab delimited format.
 This file is loaded together with the description of the clinical paramenters present in Target 
 This function uses a specific configuration of Target column of the affylmGUI target file.
 To know more about target file see affylmGUI help.
 Each row of the column named Target, in the affylmGUI target file, describes the clinical parameters.
 Each clinical parameter is separated from the others by an underscore. 
 The affylmGUI target file will look like:
<table><tr><td>
 Name </td>
<td>	FileName </td>
</tr><tr><td>	Target </td>
<td>
 mC1  </td>
</tr><tr><td>	M1.CEL	 </td>
<td> 	<code>pos_yes_1_NA_0</code> </td>
</tr><tr><td>
 mC2  </td>
<td>	M4.CEL	</td>
</tr><tr><td> <code>pos_no_2_NA_0</code> </td>
<td>
 mC3  </td>
</tr><tr><td>	M7.CEL	</td>
<td> <code>neg_no_3_pos_0</code> </td>
</tr><tr><td>
 mE1  </td>
<td>	M3.CEL	</td>
</tr><tr><td> <code>neg_yes_3_neg_0</code> </td>
<td>
 mE2  </td>
</tr><tr><td>	M6.CEL	</td>
<td> <code>neg_no_NA_1_0</code> </td>
</tr><tr><td>
 mE3  </td>
<td>	M9.CEL	</td>
</tr><tr><td> <code>neg_yes_3_pos_0</code> </td>
<td>
 mI1  </td>
</tr><tr><td>	M2.CEL	</td>
<td> <code>pos_no_2_neg_1</code> </td>
</tr><tr><td>
 mI2  </td>
<td>	M5.CEL	</td>
</tr><tr><td> <code>pos_yes_2_pos_1</code> </td>
<td>
 Name </td>
</tr></table> <p></p><p></p>

utilities

This package was developed to simplify the use of
Bioconductor tools for beginners having limited or no
experience in writing R code. This library provides a graphical
interface for microarray gene and exon level analysis as well
as miRNA/mRNA-seq data analysis

Raffaele A Calogero

oneChannelGUI

A graphical interface designed to facilitate analysis of
microarrays and miRNA/RNA-seq data on laptops

OpenLargefiles function

The function creates and expressionSet starting from al file containing the expresison data in a tab delimited format.
 This file is loaded together with the description of the clinical paramenters present in Target 
 This function uses a specific configuration of Target column of the affylmGUI target file.
 To know more about target file see affylmGUI help.
 Each row of the column named Target, in the affylmGUI target file, describes the clinical parameters.
 Each clinical parameter is separated from the others by an underscore. 
 The affylmGUI target file will look like:
<tabular>lll</tabular>{
 Name 	FileName 	Target mC1  	M1.CEL	 	<code>pos_yes_1_NA_0</code> mC2  	M4.CEL		<code>pos_no_2_NA_0</code> mC3  	M7.CEL		<code>neg_no_3_pos_0</code> mE1  	M3.CEL		<code>neg_yes_3_neg_0</code> mE2  	M6.CEL		<code>neg_no_NA_1_0</code> mE3  	M9.CEL		<code>neg_yes_3_pos_0</code> mI1  	M2.CEL		<code>pos_no_2_neg_1</code> mI2  	M5.CEL		<code>pos_yes_2_pos_1</code> mI3  	M8.CEL		<code>pos_no_2_pos_1</code>
 }

OpenLargefiles: This function loads large data set made from tab delimited files

Description

Usage

Arguments

Name	FileName
Target	mC1
M1.CEL	`pos_yes_1_NA_0`
mC2	M4.CEL
`pos_no_2_NA_0`	mC3
M7.CEL	`neg_no_3_pos_0`
mE1	M3.CEL
`neg_yes_3_neg_0`	mE2
M6.CEL	`neg_no_NA_1_0`
mE3	M9.CEL
`neg_yes_3_pos_0`	mI1
M2.CEL	`pos_no_2_neg_1`
mI2	M5.CEL
`pos_yes_2_pos_1`	Name