OpenmRNABam


 The function creates and expressionSet starting from the association of reads mapped by Bowtie using
 chromosome oriented mapping controlled by oneChannelGUI and associate those mapping to gene-level
 regions extracted by UCSC browser.
 IMPORTANT at the present time the expression set is base on gene-level data and not on exon-level data.


utilities

This package was developed to simplify the use of
Bioconductor tools for beginners having limited or no
experience in writing R code. This library provides a graphical
interface for microarray gene and exon level analysis as well
as miRNA/mRNA-seq data analysis

Raffaele A Calogero

oneChannelGUI

A graphical interface designed to facilitate analysis of
microarrays and miRNA/RNA-seq data on laptops

OpenmRNABam function

The function creates and expressionSet starting from the association of reads mapped by Bowtie using
 chromosome oriented mapping controlled by oneChannelGUI and associate those mapping to gene-level
 regions extracted by UCSC browser.
 IMPORTANT at the present time the expression set is base on gene-level data and not on exon-level data.

OpenmRNABam: This function loads Bam files generated by local mapping with bowte in oneChannelGUI

Description

Usage

Arguments