mapping2ensembl


This function associates the statistical and expression data produced by a oneChannleGUI exon-level analysis
to the exonic structure of Entrez Gene ID. This function uses biomaRt to retrieve the sequence of EG exons.
RRE database is instead used to retrieve the exon-level target sequences. Any exon-level probe set id to be associated to
the EG exonic sequence need to be a perfct matching substring of the exon. In the otehr case no exon is associated to the probe
set

 manip 

This package was developed to simplify the use of
Bioconductor tools for beginners having limited or no
experience in writing R code. This library provides a graphical
interface for microarray gene and exon level analysis as well
as miRNA/mRNA-seq data analysis

Raffaele A Calogero

oneChannelGUI

A graphical interface designed to facilitate analysis of
microarrays and miRNA/RNA-seq data on laptops

mapping2ensembl function

This function associates the statistical and expression data produced by a oneChannleGUI exon-level analysis
to the exonic structure of Entrez Gene ID. This function uses biomaRt to retrieve the sequence of EG exons.
RRE database is instead used to retrieve the exon-level target sequences. Any exon-level probe set id to be associated to
the EG exonic sequence need to be a perfct matching substring of the exon. In the otehr case no exon is associated to the probe
set

mapping2ensembl: Associating e-level probe sets to entrez gene exonic structure

Description

Usage

Arguments