mapping2exon


This function retrieve from RRE the PSR sequences associated to the exon-level probe sets
and all exons associated to the gene associated to PRS. Subsequently identify the exon  where PSR maps and procuces a 
fasta file were are located exon-level PSR and target exon.
The mapping is done using the countPattern function of the Biostrings package. Up to three mismathces are allowed in PSR
mapping on exonic sequence.


 manip 

This package was developed to simplify the use of
Bioconductor tools for beginners having limited or no
experience in writing R code. This library provides a graphical
interface for microarray gene and exon level analysis as well
as miRNA/mRNA-seq data analysis

Raffaele A Calogero

oneChannelGUI

A graphical interface designed to facilitate analysis of
microarrays and miRNA/RNA-seq data on laptops

mapping2exon function

This function retrieve from RRE the PSR sequences associated to the exon-level probe sets
and all exons associated to the gene associated to PRS. Subsequently identify the exon  where PSR maps and procuces a 
fasta file were are located exon-level PSR and target exon.
The mapping is done using the countPattern function of the Biostrings package. Up to three mismathces are allowed in PSR
mapping on exonic sequence.

This function maps on exon-level Probe Selection Region (PSR) starting for the file produced by function 
oneChannelGUI: Mapping exon level probe sets to Reference Sequences

This function maps on exon-level Probe Selection Region (PSR) starting for the file produced by function 
oneChannelGUI: Mapping exon level probe sets to Reference Sequences

mapping2exon: This function maps on exon-level Probe Selection Region (PSR) starting for the file produced by function oneChannelGUI: Mapping exon level probe sets to Reference Sequences

Description

Usage

Arguments