qcMDS

 This function is a variation on the usual multdimensional scaling
     (or principle coordinate) plot, in that a distance measure
     particularly appropriate for the digital gene expression (DGE)
     context is used. The distance between each pair of samples
     (columns) is the square root of the common dispersion for the top
     genes which best distinguish that pair of samples. These
     top genes are selected according to the tagwise
     dispersion of all the samples.

 manip 

This package was developed to simplify the use of
Bioconductor tools for beginners having limited or no
experience in writing R code. This library provides a graphical
interface for microarray gene and exon level analysis as well
as miRNA/mRNA-seq data analysis

Raffaele A Calogero

oneChannelGUI

A graphical interface designed to facilitate analysis of
microarrays and miRNA/RNA-seq data on laptops

qcMDS function

This function is a variation on the usual multdimensional scaling
     (or principle coordinate) plot, in that a distance measure
     particularly appropriate for the digital gene expression (DGE)
     context is used. The distance between each pair of samples
     (columns) is the square root of the common dispersion for the top
     genes which best distinguish that pair of samples. These
     top genes are selected according to the tagwise
     dispersion of all the samples.

qcMDS: This function plots the sample relations based on multidimensional scaling using the plotMDS.dge edgeR function

Description

Usage

Arguments