reformatGdl

This function reorganizes the raw NGS data saved in a GenomeDataList object in a 
matrix. Matrix rows are peaks containing multiple reads. For peak detection, user has to indicate the
amount of extension of each read, e.g. 200 nt in chipseq experiments, and the number of reads due 
by random events, e.g. 8.

 manip 

This package was developed to simplify the use of
Bioconductor tools for beginners having limited or no
experience in writing R code. This library provides a graphical
interface for microarray gene and exon level analysis as well
as miRNA/mRNA-seq data analysis

Raffaele A Calogero

oneChannelGUI

A graphical interface designed to facilitate analysis of
microarrays and miRNA/RNA-seq data on laptops

reformatGdl function

This function reorganizes the raw NGS data saved in a GenomeDataList object in a 
matrix. Matrix rows are peaks containing multiple reads. For peak detection, user has to indicate the
amount of extension of each read, e.g. 200 nt in chipseq experiments, and the number of reads due 
by random events, e.g. 8.

reformatGdl: This function reorganizes single NGS data in a matrix to be used for statistical analysis.

Description

Usage

Arguments