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onemap (version 1.0-1)

Software for constructing genetic maps in outcrossing species

Description

Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)

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Version

Install

install.packages('onemap')

Monthly Downloads

662

Version

1.0-1

License

GPL (>= 2)

Maintainer

Gabriel Alves Margarido

Last Published

April 28th, 2009

Functions in onemap (1.0-1)

def.rf.3pts

Three-point analysis of genetic markers

try.seq

Try to map a marker into every possible position between markers in a given sequence

ripple

Compares and displays plausible alternative orders for a given linkage map

make.seq

Create a sequence of markers

onemap-package

Software for constructing genetic maps in outcrossing species

example_out

Data from a full-sib family derived from two outbred parents

rf.graph.table

Plots a pairwise recombination fraction matrix using a color scale.

marker.type

Type of segregation of markers

order.seq

Search for the best order of markers combining compare and try.seq functions

set.map.fun

Defines the default mapping function

read.outcross

Read data from a segregating full-sib population

map

Construct the linkage map for a sequence of markers

add_drop

Add or Drop Markers From a Sequence

rcd

Rapid Chain Delineation

map_func

Mapping functions Haldane and Kosambi

onemap-internal

Internal onemap functions

group

Assign markers to linkage groups

rf.2pts

Two-point analysis between genetic markers

compare

Compare all possible orders for a given sequence