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onemap (version 1.0-1)
Software for constructing genetic maps in outcrossing species
Description
Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)
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3.0.0
2.8.2
2.8.1
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Install
install.packages('onemap')
Monthly Downloads
579
Version
1.0-1
License
GPL (>= 2)
Maintainer
Gabriel Alves Margarido
Last Published
April 28th, 2009
Functions in onemap (1.0-1)
Search functions
def.rf.3pts
Three-point analysis of genetic markers
try.seq
Try to map a marker into every possible position between markers in a given sequence
ripple
Compares and displays plausible alternative orders for a given linkage map
make.seq
Create a sequence of markers
onemap-package
Software for constructing genetic maps in outcrossing species
example_out
Data from a full-sib family derived from two outbred parents
rf.graph.table
Plots a pairwise recombination fraction matrix using a color scale.
marker.type
Type of segregation of markers
order.seq
Search for the best order of markers combining compare and try.seq functions
set.map.fun
Defines the default mapping function
read.outcross
Read data from a segregating full-sib population
map
Construct the linkage map for a sequence of markers
add_drop
Add or Drop Markers From a Sequence
rcd
Rapid Chain Delineation
map_func
Mapping functions Haldane and Kosambi
onemap-internal
Internal onemap functions
group
Assign markers to linkage groups
rf.2pts
Two-point analysis between genetic markers
compare
Compare all possible orders for a given sequence