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onemap (version 2.0-1)

onemap-internal: Internal onemap functions

Description

Functions from onemap not to be directly called by the user.

Usage

acum(w)
avoid.reverse(input)
adjust.rf.ril(r,type,expand)
codif.data(geno.in,segr.type.in)
comb(x,y)
comb.ger(f)
cr2pts(mrk1, mrk2, segr.type1, segr.type2)
cr3pts(mrk1, mrk2, mrk3, segr.type1, segr.type2, segr.type3)
Cindex(order,r)
diplo(w, seq.num, seq.phases)
draw.order(map.input)
draw.rf.inter(info.graph, scale, cex)
draw.try(base.input, try.input, pos=NULL)
est.map.c(geno,type,phase,rec,verbose,tol=1e-2)
perm.pars(v)
perm.tot(v)
phases(input.seq, LOD=0, max.rf=0.50)
plotFunction.out(info.graph, cex, main)
rem.amb.ph(M,w,seq.num)
return.geno(segr.type, link.phases)
ser.ord(r,i)
## S3 method for class 'bc.onemap':
print(x, \dots)
## S3 method for class 'compare':
print(x, \dots)
## S3 method for class 'f2.onemap':
print(x, \dots)
## S3 method for class 'order':
print(x, \dots)
## S3 method for class 'outcross':
print(x, \dots)
## S3 method for class 'rf.3pts':
print(x, \dots)
## S3 method for class 'sequence':
print(x, \dots)
## S3 method for class 'riself.onemap':
print(x, \dots)
## S3 method for class 'risib.onemap':
print(x, \dots)

Arguments