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onemap (version 2.0-4)

onemap-internal: Internal onemap functions

Description

Functions from onemap not to be directly called by the user.

Usage

acum(w)
avoid.reverse(input)
adjust.rf.ril(r,type,expand)
codif.data(geno.in,segr.type.in)
comb(x,y)
comb.ger(f)
cr2pts(mrk1, mrk2, segr.type1, segr.type2)
cr3pts(mrk1, mrk2, mrk3, segr.type1, segr.type2, segr.type3)
Cindex(order,r)
diplo(w, seq.num, seq.phases)
draw.order(map.input)
draw.rf.inter(info.graph, scale, cex)
draw.try(base.input, try.input, pos=NULL)
est.map.c(geno,type,phase,rec,verbose,tol=1e-2)
perm.pars(v)
perm.tot(v)
phases(input.seq, LOD=0, max.rf=0.50)
plotFunction.out(info.graph, cex, main)
rem.amb.ph(M,w,seq.num)
return.geno(segr.type, link.phases)
ser.ord(r,i)
# S3 method for bc.onemap
print(x, …)
# S3 method for compare
print(x, …)
# S3 method for f2.onemap
print(x, …)
# S3 method for order
print(x, …)
# S3 method for outcross
print(x, …)
# S3 method for rf.3pts
print(x, …)
# S3 method for sequence
print(x, …)
# S3 method for riself.onemap
print (x, …)
# S3 method for risib.onemap
print (x, …)

Arguments