p_values_for_occurrence_of_term_in_group

Get p-values for observing at least as many of each term as occur in <code>term_sets</code> given the population frequencies of the terms

Create R plots visualising ontological terms and the relationships between them with various graphical options - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologyPlot

Visualising Sets of Ontological Terms

p_values_for_occurrence_of_term_in_group function

<dl><dt>ontology</dt>
<dd><code>ontology_index</code> object</dd>
<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs</dd>
<dt>terms_freq</dt>
<dd>Numeric vector of population frequencies of terms.</dd></dl>

Arguments

Get p-values for observing at least as many of each term as occur in term_sets given the population frequencies of the terms — p_values_for_occurrence_of_term_in_group

<dl>

<dt>ontology</dt>
<dd><code>ontology_index</code> object</dd>


<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs</dd>


<dt>terms_freq</dt>
<dd>Numeric vector of population frequencies of terms.</dd>

</dl>

p_values_for_occurrence_of_term_in_group: Get p-values for observing at least as many of each term as occur in `term_sets` given the population frequencies of the terms

Description

Usage

Value

Arguments

See Also