remove_uninformative_terms

For a set of ontological annotation sets, remove terms annotated to the same objects as all their children. Useful for selecting terms for summarising a set of annotation sets, as it can lead to a significant reduction in the number of terms.

Create R plots visualising ontological terms and the relationships between them with various graphical options - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologyPlot

Visualising Sets of Ontological Terms

remove_uninformative_terms function

<dl><dt>ontology</dt>
<dd><code>ontology_index</code> object</dd>
<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs</dd></dl>

Arguments

Remove uninformative terms from union of all terms in set of annotations — remove_uninformative_terms

<dl>

<dt>ontology</dt>
<dd><code>ontology_index</code> object</dd>


<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs</dd>

</dl>

remove_uninformative_terms: Remove uninformative terms from union of all terms in set of annotations

Description

Usage

Value

Arguments

Examples