width_by_significance

Function to get node sizes for terms based on statistical significance of seeing at least this number of each term in <code>term_sets</code>

Create R plots visualising ontological terms and the relationships between them with various graphical options - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologyPlot

Visualising Sets of Ontological Terms

width_by_significance function

<dl><dt>ontology</dt>
<dd><code>ontology_index</code> object</dd>
<dt>terms</dt>
<dd>Character vector of ontological terms</dd>
<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs</dd>
<dt>frequencies</dt>
<dd>Numeric vector of term frequencies named by term IDs</dd></dl>

Arguments

Function to get node sizes for terms based on statistical significance of seeing at least this number of each term in term_sets — width_by_significance

<dl>

<dt>ontology</dt>
<dd><code>ontology_index</code> object</dd>


<dt>terms</dt>
<dd>Character vector of ontological terms</dd>


<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs</dd>


<dt>frequencies</dt>
<dd>Numeric vector of term frequencies named by term IDs</dd>

</dl>

width_by_significance: Function to get node sizes for terms based on statistical significance of seeing at least this number of each term in `term_sets`

Description

Usage

Value

Arguments

See Also