get_sim_grid

Numeric matrix with rows and columns corresponding to (and named by) term IDs, and cells containing the similarity between the row and column term

term_sim_mat

List of character vectors of ontological term IDs.

term_sets

term_sets2

Character string - either <code>average</code> or <code>product</code>, indicating whether to use the `best-match-average' or `best-match-product' method

combine


Equivalent to <code><a rd-options="" href="/link/get_sim_mat?package=ontologySimilarity&version=1.0" data-mini-rdoc="ontologySimilarity::get_sim_mat">get_sim_mat</a></code> for two sets of term sets.


Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.

get_sim_grid: Get similarity matrix from a term-to-term similarity matrix between two sets of term sets

Description

Usage

Arguments

Value