get_term_sim_mat

ontology

Numeric vector of information contents of terms (named by term)

information_content

Logical term descendancy matrix, dimensions symmetrically labelled by terms, and where by a cell value of TRUE indicates that the row is the ancestor of the column term (in the sense of the DAG structure of the HPO.

term_descendancy_matrix

Character vector - either "lin" (to use Lin's expression of similarity of terms) or "resnik" (to use Resnik's definition)

method

Restrict rows to Character vector of term names for which to compute corresponding similarities to all terms <code>information_content</code>

restrict_rows_to

Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.

get_term_sim_mat: Get term-term similarity matrix

Description

Usage

Arguments

Value

See Also