get_asym_sim_grid

Create a numeric matrix of similarities between two lists of term sets, but only averaging over the terms in sets from <code>A</code> the similarities of the best matches in sets from <code>B</code>.

Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologySimilarity

Calculating Ontological Similarities

get_asym_sim_grid function

<dl><dt>A</dt>
<dd>List of term sets.</dd>
<dt>B</dt>
<dd>List of term sets.</dd>
<dt>...</dt>
<dd>Other arguments to be passed to <code>get_sim_grid</code>.</dd></dl>

Arguments

Get asymmetrical similarity matrix — get_asym_sim_grid

<dl>

<dt>A</dt>
<dd>List of term sets.</dd>


<dt>B</dt>
<dd>List of term sets.</dd>


<dt>...</dt>
<dd>Other arguments to be passed to <code>get_sim_grid</code>.</dd>

</dl>

get_asym_sim_grid: Get asymmetrical similarity matrix

Description

Usage

Value

Arguments

See Also