get_profile_sims

Get numeric vector of similarities between each item in a list of term sets and another `ontological profile', i.e. a single term set. Similarity averaging over terms in <code>term_sets</code>.

Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologySimilarity

Calculating Ontological Similarities

get_profile_sims function

<dl><dt>profile</dt>
<dd>Character vector of term IDs.</dd>
<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs.</dd>
<dt>...</dt>
<dd>Other arguments to pass to <code>get_sim_grid</code>.</dd></dl>

Arguments

Get similarities of term sets to profile — get_profile_sims

<dl>

<dt>profile</dt>
<dd>Character vector of term IDs.</dd>


<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs.</dd>


<dt>...</dt>
<dd>Other arguments to pass to <code>get_sim_grid</code>.</dd>

</dl>

get_profile_sims: Get similarities of term sets to profile

Description

Usage

Value

Arguments

See Also