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oompaData (version 3.1.5)

lungData-data: Lung Cancer Gene Expression Dataset

Description

This data set contains clinical annotations and the log expression of 150 genes for a set of 444 lung cancer patients. The 150 genes were selected randomly from a larger Affymetrix U133A dataset.

Usage

data(lungData)

Arguments

Format

A data matrix (lung.dataset) containing the log expression of 150 genes (rows) in 444 lung tumor samples (columns), along with a data frame (lung.clinical) containing clinical annotations of the patients.

References

Abrams ZB, Zucker M, Wang M, Asiaee Taheri A, Abruzzo LV, Coombes KR.
Thirty biologically interpretable clusters of transcription factors distinguish cancer type.
BMC Genomics. 2018 Oct 11;19(1):738. doi: 10.1186/s12864-018-5093-z.

Asiaee A, Abrams ZB, Nakayiza S, Sampath D, Coombes KR.
Explaining Gene Expression Using Twenty-One MicroRNAs.
J Comput Biol. 2020 Jul;27(7):1157-1170. doi: 10.1089/cmb.2019.0321.