openCyto (version 1.10.3)

plot,fcFilterList,ANY-method: plot a fcFilterList

Description

It is usually called by plot method for fcTree instead of directly by users.

Usage

## S3 method for class 'fcFilterList,ANY':
plot(x, y, samples = NULL, posteriors = FALSE,
  xlim = NULL, ylim = NULL, node = NULL, data = NULL, breaks = 20,
  lwd = 1, ...)

Arguments

x

fcFilterList

y

character channel name

samples

character a vector of sample names to be plotted

posteriors

logical indicating whether posteriors should be plotted

xlim,ylim

scale settings for x,y axises

node

character population name associated with the fcFilterList

data

GatingSet object

breaks

passed to hist

lwd

line width

...

other arguments passed to base plot

Examples

env1<-new.env(parent=emptyenv())
 #gt is a gatingTemplate, gs is a GatingSet
 gating(gt,gs,env1) #the flowClust gating results are stored in env1
 plot(env1$fct,"nonDebris",post=T) #plot the priors as well as posteriors for the "nonDebris" gate