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openVA (version 1.0.5)

Automated Method for Verbal Autopsy

Description

Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics.

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Version

Install

install.packages('openVA')

Monthly Downloads

282

Version

1.0.5

License

GPL-2

Maintainer

Zehang Li

Last Published

July 7th, 2018

Functions in openVA (1.0.5)

interVA.train

Extended InterVA method for non-standard input
plotVA

Plot top CSMF for a fitted model
getCSMF

Obtain CSMF from fitted model
codeVA

Running automated method on VA data
ConvertData

Converting Input data with different coding scheme to standard format
ConvertData.phmrc

Convert standard PHMRC data into binary indicator format
getCSMF_accuracy

Calculate CSMF accuracy
openVA_update

Update openVA packages
getIndivProb

Extract individual distribution of cause of death
openVA_status

Check openVA packages status
getPHMRC_url

Get the URL to the PHMRC dataset
stackplotVA

plot grouped CSMF from a "insilico" object
getTopCOD

Extract the most likely cause of death