
An ExpressionSet object containing trimmed GSE46141 data. The object contains
gene expression measurements on local breast tumours and liver, lymph node, skin local-
regional etc metastatic tumours. Contains 9503 features and 80 samples (ascite, bone, lung and skin
samples were removed).


datasets

The R implementation of mCOPA package published by Wang et al.
(2012). Oppar provides methods for Cancer Outlier profile Analysis. Although
initially developed to detect outlier genes in cancer studies, methods presented
in oppar can be used for outlier profile analysis in general. In addition,
tools are provided for gene set enrichment and pathway analysis.

Soroor Hediyeh zadeh

oppar

Outlier profile and pathway analysis in R

bcm function

Contains gene expression matrix, phenotype (pData) and feature (fData) data:
<dl>
  <dt>ID</dt><dd>In fData(e) -- probe IDs</dd> <dt>EntrezGeneID</dt><dd>In fData(e) -- Entrez Ids</dd> <dt>GeneSymbol</dt><dd>In fData(e) -- Gene Symbols</dd> <dt>geo_accession</dt><dd>In pData(e) -- GEO accession IDs</dd> <dt>source_name_ch1</dt><dd>In pData(e) -- Sample information</dd> </dl>

Format

<a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46141">http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46141</a>

Source

<a href = 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46141'>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46141</a>

bcm: Breast cancer metastases from different anatomical sites

Description

Usage

Arguments

Value

Format

Source