eset


An ExpressionSet object containing microarray gene expression measurements on normal tissue and metastatic
prostate cancer tumoures, and the corresponsing feature and phynotypic meta data.


datasets

The R implementation of mCOPA package published by Wang et al.
(2012). Oppar provides methods for Cancer Outlier profile Analysis. Although
initially developed to detect outlier genes in cancer studies, methods presented
in oppar can be used for outlier profile analysis in general. In addition,
tools are provided for gene set enrichment and pathway analysis.

Soroor Hediyeh zadeh

oppar

Outlier profile and pathway analysis in R

eset function

An ExpressionSet object with 10945 features and 86 samples.
<dl>
  <dt>title</dt><dd>In pData(eset) -- Sample names</dd> <dt>geo_accession</dt><dd>In pData(eset) --GEO accession numbers</dd> <dt>characteristics_ch1</dt><dd>In pData(eset) -- sample description</dd> <dt>ID</dt><dd>In fData(eset) -- probes Ids</dd> <dt>Gene.title</dt><dd>...</dd> <dt>Gene.symbol</dt><dd>In fData(eset) -- Gene Symbol</dd> <dt>Gene.ID</dt><dd>In fData(eset) -- Entrez Gene IDs</dd> </dl>

Format

<a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6099">http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6099</a>

Source

<a href = 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6099'>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6099</a>

eset: Tomlins et al. Prostate Cancer data (GEO: GSE6099)

Description

Usage

Arguments

Value

Format

Source