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oppar (version 1.0.2)

Outlier profile and pathway analysis in R

Description

The R implementation of mCOPA package published by Wang et al. (2012). Oppar provides methods for Cancer Outlier profile Analysis. Although initially developed to detect outlier genes in cancer studies, methods presented in oppar can be used for outlier profile analysis in general. In addition, tools are provided for gene set enrichment and pathway analysis.

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Version

Version

1.0.2

License

GPL-2

Maintainer

Soroor Hediyeh zadeh

Last Published

February 15th, 2017

Functions in oppar (1.0.2)

opa

Outlier profile Analysis
bcm

Breast cancer metastases from different anatomical sites
getSampleOutlier

Retrieving outlier genes in samples
getSubtypeProbes

Retrieving outlier genes from a group of related samples
oppar

oppar: A package for outlier profile and pathway analysis.
eset

Tomlins et al. Prostate Cancer data (GEO: GSE6099)
gsva

gsva
maupin

Maupin's TGFb data and a TGFb gene signature
OPPARList-class

A S4 class for the output of OPPAR main function, opa.