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optBiomarker (version 1.0-28)

Estimation of Optimal Number of Biomarkers for Two-Group Microarray Based Classifications at a Given Error Tolerance Level for Various Classification Rules

Description

Estimates optimal number of biomarkers for two-group classification based on microarray data.

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Version

Install

install.packages('optBiomarker')

Monthly Downloads

135

Version

1.0-28

License

GPL (>= 2)

Maintainer

Mizanur Khondoker

Last Published

January 18th, 2021

Functions in optBiomarker (1.0-28)

internal

Internal functions for optBiomarker package.
optimiseBiomarker

Estimates optimal number of biomarkers at a given error tolerance level for various classification rules
errorDbase

Database of leave-one-out cross validation errors for various combinations of data characteristics
optBiomarker-package

R package for estimating optimal number of biomarkers at a given error tolerance level for various classification rules
realBiomarker

A set of 54359 median gene expressions in log (base 2) scale
classificationError

Estimation of misclassification errors (generalisation errors) based on statistical and various machine learning methods
simData

Simulation of microarray data