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optimos.prime (version 0.1.2)

Optimos Prime Helps Calculate Autoecological Data for Biological Species

Description

Calculates autoecological data (optima and tolerance ranges) of a biological species given an environmental matrix. The package calculates by weighted averaging, using the number of occurrences to adjust the tolerance assigned to each taxon to estimate optima and tolerance range in cases where taxa have unequal occurrences. See the detailed methodology by Birks et al. (1990) , and a case example by Potapova and Charles (2003) .

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Version

Install

install.packages('optimos.prime')

Monthly Downloads

190

Version

0.1.2

License

GNU General Public License

Maintainer

Joaqu<c3><ad>n Cochero

Last Published

January 29th, 2020

Functions in optimos.prime (0.1.2)

environmental_df

Environmental Sample Data
op_lists

Optimos Prime calculates optima and tolerance for a matrix of species and environmental factors
optimos.prime

Optimos Prime: A package for calculating autoecological data (optima and tolerance range) for biological species
op_calculate

This function of Optimos Prime calculates optima and tolerance for a data frame of species and environmental factors
op_plot

Optimos Prime calculates optima and tolerance for a matrix of species and environmental factors
species_df

Species Sample Data
species_data_example_2

Species Sample Data - Example 2
environmental_data_example_2

Environmental Sample Data - Example 2