.create_tmp_phylo_matrix

Creates a correlation matrix from a phylogenetic tree for the species remaining
in the data subset during leave-one-out analysis.

internal

Generates prediction intervals and orchard plots for
meta-analytic and meta-regression models fitted with the 'metafor'
package. Orchard plots augment classic forest plots by displaying
individual effect sizes together with group means and their confidence
and prediction intervals, providing an enhanced visualization of
meta-analytic data for ecology, evolution, and beyond. Methods are
described in Nakagawa et al. (2023) <doi:10.1111/2041-210X.14152>.

Daniel Noble

orchaRd

Visualizing Meta-Analyses with Orchard Plots and Prediction
Intervals

Shinichi Nakagawa

.create_tmp_phylo_matrix function

<dl><dt>data</dt>
<dd>A data frame containing the variables specified in phylo_args,
representing the current data subset after removing one group.</dd>
<dt>phylo_args</dt>
<dd>A list of arguments for the phylogenetic matrix calculation, including:<ul>
<li>tree: A phylogenetic tree object of class "phylo"</li>
<li>species_colname: Name of the column in the data that contains species names</li>
</ul></dd></dl>

Arguments

Facundo Decunta - fdecunta@agro.uba.ar

Author

Create Temporary Phylogenetic Matrix For Leave-One-Out Analysis — .create_tmp_phylo_matrix

<dl>

<dt>data</dt>
<dd>A data frame containing the variables specified in phylo_args,
representing the current data subset after removing one group.</dd>


<dt>phylo_args</dt>
<dd>A list of arguments for the phylogenetic matrix calculation, including:<ul>
<li>tree: A phylogenetic tree object of class "phylo"</li>
<li>species_colname: Name of the column in the data that contains species names</li>
</ul></dd>

</dl>

.create_tmp_phylo_matrix: Create Temporary Phylogenetic Matrix For Leave-One-Out Analysis

Description

Usage

Value

Arguments

Author