finalSet

This subset includes 2,009 transcripts and four phenotypic variables for
242 subjects with squamous cell cervical cancer.

datasets

Provides a function for fitting various penalized Bayesian
cumulative link ordinal response models when the number of parameters
exceeds the sample size. These models have been described in
Zhang and Archer (2021) <doi:10.1186/s12859-021-04432-w>.

Kellie Archer

ordinalbayes

Bayesian Ordinal Regression for High-Dimensional Data

Kellie J. Archer

Anna Seffernick

Shuai Sun

Yiran Zhang

finalSet function

The format is of formal class 'DESeqTransform' (package "DESeq2") with the following extractor functions:<dl>
<dt>assay</dt>
<dd>includes rld transformed transcript expression data</dd><dt>colData</dt>
<dd>includes phenotypic data: <code>age_at_index</code>, <code>cigarettes_per_day</code>, <code>race</code>, and <code>Stage</code></dd>
</dl>

Format

Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data. — finalSet

The format is of formal class 'DESeqTransform' (package "DESeq2") with the following extractor functions:<dl>
<dt>assay</dt>
<dd>includes rld transformed transcript expression data</dd>

<dt>colData</dt>
<dd>includes phenotypic data: <code>age_at_index</code>, <code>cigarettes_per_day</code>, <code>race</code>, and <code>Stage</code></dd>


</dl>

finalSet: Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data.

Description

Usage

Arguments

Format