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oro.nifti (version 0.5.2)

Rigorous - NIfTI + ANALYZE + AFNI : Input / Output

Description

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.

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Version

Install

install.packages('oro.nifti')

Monthly Downloads

2,823

Version

0.5.2

License

BSD_3_clause + file LICENSE

Homepage

http://rig.oro.us.com

Maintainer

Brandon Whitcher

Last Published

May 7th, 2015

Functions in oro.nifti (0.5.2)

Extract Image Attribute glmin

dim_info-methods

Extract Image Attribute dim_info

Extract Image Attribute srow_z

session_error-methods

Extract Image Attribute session_error

dropImageDimension

Drop Image Dimension

Merge Two NIfTI or ANALYZE Volumes

nifti-operators

Operations for NIfTI Objects

orthographic-methods

Methods for Function `orthographic' in Package `dcemriS4'

Methods for Function `image'

compressed-methods

Extract Image Attribute compressed

Gets Voxel Dimensions

intent_p1-methods

Extract Image Attribute intent_p1

extender-methods

Extract Image Attribute extender

Extract Image Attribute bitpix

Extract Image Attribute views

Extract Image Attribute omax

Bitwise Conversion Subroutines

hkey_un0-methods

Extract Image Attribute hkey_un0

Convert NIfTI Codes

Convert NIfTI Codes

extents-methods

Extract Image Attribute extents

niftiExtension-class

Class "niftiExtension"

Hot Metal Color Table

funused1-methods

Extract Image Attribute funused1

cal_units-methods

Extract Image Attribute cal_units

funused3-methods

Extract Image Attribute funused3

descrip-methods

Extract Image Attribute descrip

exp_time-methods

Extract Image Attribute exp_time

qform_code-methods

Extract Image Attribute qform_code

Constructor for Analyze

Facilitate the Creation and Modification of Audit Trails

overlay-methods

Methods for Function overlay

intent_p2-methods

Extract Image Attribute intent_p2

Extract Image Attribute dim_

scl_inter-methods

Extract Image Attribute scl_inter

niftiExtensionSection-class

Class "niftiExtensionSection"

performPermutation

Transform array with orthogonal permutation matrix

vox_units-methods

Extract Image Attribute vox_units

data_type-methods

Extract Image Attribute data_type

Extract Image Attribute magic

verified-methods

Extract Image Attribute verified

slice_code-methods

Extract Image Attribute slice_code

scl_slope-methods

Extract Image Attribute scl_slope

dim_un0-methods

Extract Image Attribute dim_un0

scannum-methods

Extract Image Attribute scannum

intent_p3-methods

Extract Image Attribute intent_p3

intent_name-methods

Extract Image Attribute intent_name

vols_added-methods

Extract Image Attribute vols_added

datatype-methods

Extract Image Attribute datatype

quatern_d-methods

Extract Image Attribute quatern_d

Extract Image Attribute pixdim

qoffset_z-methods

Extract Image Attribute qoffset_z

Dimension Accessor Functions

cal_min-methods

Extract Image Attribute cal_min

aux_file-methods

Extract Image Attribute aux_file

Reorient Image using NIfTI header

nifti_assign-methods

Methods for Function [<- in Package 'base'

funused2-methods

Extract Image Attribute funused2

orientation-methods

Extract NIfTI 3D Image Orientation

integerTranslation

integerTranslation

slice_end-methods

Extract Image Attribute slice_end

regular-methods

Extract Image Attribute regular

Extract Image Attribute omin

resetSlopeIntercept

Change Intercept to 0 and Slope to 1 in NIfTI Object

Remove File Extensions Around the NIfTI/ANALYZE Formats

hist_un0-methods

Extract Image Attribute hist_un0

Extract Image Attribute origin

Tim's Useful Color Table

field_skip-methods

Extract Image Attribute field_skip

unused1-methods

Extract Image Attribute unused1

Creates the onefile Specification for NIfTI

generated-methods

Extract Image Attribute generated

Constructor for NIfTI

Extract Image Attribute glmax

quatern_c-methods

Extract Image Attribute quatern_c

cal_max-methods

Extract Image Attribute cal_max

Extract Image Attribute orient

sform_code-methods

Extract Image Attribute sform_code

intent_code-methods

Extract Image Attribute intent_code

db_name-methods

Extract Image Attribute db_name

Extract Image Attribute smax

Force an Object to Belong to the ANALYZE or NIfTI Class

Convert ANALYZE Codes

Convert ANALYZE Codes

toffset-methods

Extract Image Attribute toffset

exp_date-methods

Extract Image Attribute exp_date

writeANALYZE-methods

vox_offset-methods

Extract Image Attribute vox_offset

Extract Image Attribute srow_y

Operations for Objects in the ANALYZE and NIfTI classes

slice_start-methods

Extract Image Attribute slice_start

qoffset_y-methods

Extract Image Attribute qoffset_y

quatern_b-methods

Extract Image Attribute quatern_b

xyzt_units-methods

Extract Image Attribute xyzt_units

Extract Image Attribute smin

niftiAuditTrail-class

Class "niftiAuditTrail"

writeAFNI-methods

audit.trail-methods

Extract or Replace NIfTI Audit Trail

Convert AFNI data codes

qoffset_x-methods

Extract Image Attribute qoffset_x

start_field-methods

Extract Image Attribute start_field

quaternion2rotation

Convert Quaternion into a Rotation Matrix

Set Minimum/Maximum Values for NIfTI data

patient_id-methods

Extract Image Attribute patient_id

Extract Image Attribute srow_x

sizeof_hdr-methods

Extract Image Attribute sizeof_hdr

slice_duration-methods

Extract Image Attribute slice_duration

writeNIfTI-methods

translateCoordinate

Translate Voxel Coordinates