Learn R Programming

⚠️There's a newer version (0.11.4) of this package.Take me there.

oro.nifti (version 0.5.2)

Rigorous - NIfTI + ANALYZE + AFNI : Input / Output

Description

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.

Copy Link

Version

Install

install.packages('oro.nifti')

Monthly Downloads

2,178

Version

0.5.2

License

BSD_3_clause + file LICENSE

Homepage

http://rig.oro.us.com

Maintainer

Brandon Whitcher

Last Published

May 7th, 2015

Functions in oro.nifti (0.5.2)

Extract Image Attribute glmin

dim_info-methods

Extract Image Attribute dim_info

Extract Image Attribute srow_z

session_error-methods

Extract Image Attribute session_error

dropImageDimension

Drop Image Dimension

Merge Two NIfTI or ANALYZE Volumes

nifti-operators

Operations for NIfTI Objects

orthographic-methods

Methods for Function `orthographic' in Package `dcemriS4'

Methods for Function `image'

compressed-methods

Extract Image Attribute compressed

Gets Voxel Dimensions

intent_p1-methods

Extract Image Attribute intent_p1

extender-methods

Extract Image Attribute extender

Extract Image Attribute bitpix

Extract Image Attribute views

Extract Image Attribute omax

Bitwise Conversion Subroutines

hkey_un0-methods

Extract Image Attribute hkey_un0

Convert NIfTI Codes

Convert NIfTI Codes

extents-methods

Extract Image Attribute extents

niftiExtension-class

Class "niftiExtension"

Hot Metal Color Table

funused1-methods

Extract Image Attribute funused1

cal_units-methods

Extract Image Attribute cal_units

funused3-methods

Extract Image Attribute funused3

descrip-methods

Extract Image Attribute descrip

exp_time-methods

Extract Image Attribute exp_time

qform_code-methods

Extract Image Attribute qform_code

Constructor for Analyze

Facilitate the Creation and Modification of Audit Trails

overlay-methods

Methods for Function overlay

intent_p2-methods

Extract Image Attribute intent_p2

Extract Image Attribute dim_

scl_inter-methods

Extract Image Attribute scl_inter

niftiExtensionSection-class

Class "niftiExtensionSection"

performPermutation

Transform array with orthogonal permutation matrix

vox_units-methods

Extract Image Attribute vox_units

data_type-methods

Extract Image Attribute data_type

Extract Image Attribute magic

verified-methods

Extract Image Attribute verified

slice_code-methods

Extract Image Attribute slice_code

scl_slope-methods

Extract Image Attribute scl_slope

dim_un0-methods

Extract Image Attribute dim_un0

scannum-methods

Extract Image Attribute scannum

intent_p3-methods

Extract Image Attribute intent_p3

intent_name-methods

Extract Image Attribute intent_name

vols_added-methods

Extract Image Attribute vols_added

datatype-methods

Extract Image Attribute datatype

quatern_d-methods

Extract Image Attribute quatern_d

Extract Image Attribute pixdim

qoffset_z-methods

Extract Image Attribute qoffset_z

Dimension Accessor Functions

cal_min-methods

Extract Image Attribute cal_min

aux_file-methods

Extract Image Attribute aux_file

Reorient Image using NIfTI header

nifti_assign-methods

Methods for Function [<- in Package 'base'

funused2-methods

Extract Image Attribute funused2

orientation-methods

Extract NIfTI 3D Image Orientation

integerTranslation

integerTranslation

slice_end-methods

Extract Image Attribute slice_end

regular-methods

Extract Image Attribute regular

Extract Image Attribute omin

resetSlopeIntercept

Change Intercept to 0 and Slope to 1 in NIfTI Object

Remove File Extensions Around the NIfTI/ANALYZE Formats

hist_un0-methods

Extract Image Attribute hist_un0

Extract Image Attribute origin

Tim's Useful Color Table

field_skip-methods

Extract Image Attribute field_skip

unused1-methods

Extract Image Attribute unused1

Creates the onefile Specification for NIfTI

generated-methods

Extract Image Attribute generated

Constructor for NIfTI

Extract Image Attribute glmax

quatern_c-methods

Extract Image Attribute quatern_c

cal_max-methods

Extract Image Attribute cal_max

Extract Image Attribute orient

sform_code-methods

Extract Image Attribute sform_code

intent_code-methods

Extract Image Attribute intent_code

db_name-methods

Extract Image Attribute db_name

Extract Image Attribute smax

Force an Object to Belong to the ANALYZE or NIfTI Class

Convert ANALYZE Codes

Convert ANALYZE Codes

toffset-methods

Extract Image Attribute toffset

exp_date-methods

Extract Image Attribute exp_date

writeANALYZE-methods

vox_offset-methods

Extract Image Attribute vox_offset

Extract Image Attribute srow_y

Operations for Objects in the ANALYZE and NIfTI classes

slice_start-methods

Extract Image Attribute slice_start

qoffset_y-methods

Extract Image Attribute qoffset_y

quatern_b-methods

Extract Image Attribute quatern_b

xyzt_units-methods

Extract Image Attribute xyzt_units

Extract Image Attribute smin

niftiAuditTrail-class

Class "niftiAuditTrail"

writeAFNI-methods

audit.trail-methods

Extract or Replace NIfTI Audit Trail

Convert AFNI data codes

qoffset_x-methods

Extract Image Attribute qoffset_x

start_field-methods

Extract Image Attribute start_field

quaternion2rotation

Convert Quaternion into a Rotation Matrix

Set Minimum/Maximum Values for NIfTI data

patient_id-methods

Extract Image Attribute patient_id

Extract Image Attribute srow_x

sizeof_hdr-methods

Extract Image Attribute sizeof_hdr

slice_duration-methods

Extract Image Attribute slice_duration

writeNIfTI-methods

translateCoordinate

Translate Voxel Coordinates