AngGym

datasets

Tools to analyze and infer orthology and paralogy relationships between glutamine synthetase proteins in seed plants.

Elena Aledo

orthGS

Orthology vs Paralogy Relationships among Glutamine Synthetase
from Plants

Juan-Carlos Aledo

AngGym function

A dataframe with 155 rows (GS proteins) and 10 columns:<dl>
<dt>n</dt>
<dd>Reference number</dd><dt>phylo_id</dt>
<dd>Unique identification label of the protein/gen</dd><dt>species</dt>
<dd>Species</dd><dt>taxon</dt>
<dd>Acrogymnospermae or Angiospermae</dd><dt>class</dt>
<dd>Angiosperms: Amborellopsida, Liliopsida, Magnoliopsida; Gymnosperms: Ginkgoopsida, Cycadopsida, Gnetopsida, Pinopsida</dd><dt>dna</dt>
<dd>CDS sequence</dd><dt>prot</dt>
<dd>Protein sequence</dd><dt>short</dt>
<dd>Unique three letter identification of the species</dd><dt>gsLineage</dt>
<dd>Either GS2, GS1a or GS1b</dd><dt>plant_group</dt>
<dd>Primitive angiosperms, Modern angiosperms, Ginkgo-Cycadales, Gnetales, Pinacea, Conifer II</dd>
</dl>

Format

Angiosperms Gymnosperms — AngGym

A dataframe with 155 rows (GS proteins) and 10 columns:<dl>
<dt>n</dt>
<dd>Reference number</dd>

<dt>phylo_id</dt>
<dd>Unique identification label of the protein/gen</dd>

<dt>species</dt>
<dd>Species</dd>

<dt>taxon</dt>
<dd>Acrogymnospermae or Angiospermae</dd>

<dt>class</dt>
<dd>Angiosperms: Amborellopsida, Liliopsida, Magnoliopsida; Gymnosperms: Ginkgoopsida, Cycadopsida, Gnetopsida, Pinopsida</dd>

<dt>dna</dt>
<dd>CDS sequence</dd>

<dt>prot</dt>
<dd>Protein sequence</dd>

<dt>short</dt>
<dd>Unique three letter identification of the species</dd>

<dt>gsLineage</dt>
<dd>Either GS2, GS1a or GS1b</dd>

<dt>plant_group</dt>
<dd>Primitive angiosperms, Modern angiosperms, Ginkgo-Cycadales, Gnetales, Pinacea, Conifer II</dd>


</dl>

AngGym: Angiosperms Gymnosperms

Description

Usage

Arguments

Format