datasets

Tools to analyze and infer orthology and paralogy relationships between glutamine synthetase proteins in seed plants.

Elena Aledo

orthGS

Orthology vs Paralogy Relationships among Glutamine Synthetase
from Plants

Juan-Carlos Aledo

agf function

A dataframe with 275 rows (GS proteins) and 23 columns:<dl>
<dt>n</dt>
<dd>Reference number</dd><dt>phylo_id</dt>
<dd>Unique identification label of the protein/gen</dd><dt>species</dt>
<dd>Species</dd><dt>taxon</dt>
<dd>Acrogymnospermae, Angiospermae, Polypodiopsida</dd><dt>dna</dt>
<dd>CDS sequence</dd><dt>prot</dt>
<dd>Protein sequence</dd><dt>short</dt>
<dd>Unique three letter identification of the species</dd><dt>gs</dt>
<dd>GS2, GS1a or GS1b_Ang, GS1b_Gym</dd><dt>pI</dt>
<dd>isoelectric point</dd><dt>factor</dt>
<dd>Ferns, GS2, GS1a, GS1b_Ang, GS1b_Gym</dd><dt>size</dt>
<dd>number of residues</dd><dt>CSpos</dt>
<dd>position signal</dd><dt>prediction</dt>
<dd>prediction</dd><dt>Lk_SP</dt>
<dd>seq pep</dd><dt>Lk_mTP</dt>
<dd>mit</dd><dt>Lk_cTP</dt>
<dd>chl</dd><dt>Lk_Thylak</dt>
<dd>thy</dd><dt>secAa</dt>
<dd>amino acid at position 2</dd><dt>core</dt>
<dd>core</dd><dt>dabase</dt>
<dd>db</dd><dt>acc</dt>
<dd>acc</dd><dt>up_id</dt>
<dd>uniprot</dd><dt>note</dt>
<dd>note</dd>
</dl>

Format

Angiosperms Gymnosperms Ferns — agf

A dataframe with 275 rows (GS proteins) and 23 columns:<dl>
<dt>n</dt>
<dd>Reference number</dd>

<dt>phylo_id</dt>
<dd>Unique identification label of the protein/gen</dd>

<dt>species</dt>
<dd>Species</dd>

<dt>taxon</dt>
<dd>Acrogymnospermae, Angiospermae, Polypodiopsida</dd>

<dt>dna</dt>
<dd>CDS sequence</dd>

<dt>prot</dt>
<dd>Protein sequence</dd>

<dt>short</dt>
<dd>Unique three letter identification of the species</dd>

<dt>gs</dt>
<dd>GS2, GS1a or GS1b_Ang, GS1b_Gym</dd>

<dt>pI</dt>
<dd>isoelectric point</dd>

<dt>factor</dt>
<dd>Ferns, GS2, GS1a, GS1b_Ang, GS1b_Gym</dd>

<dt>size</dt>
<dd>number of residues</dd>

<dt>CSpos</dt>
<dd>position signal</dd>

<dt>prediction</dt>
<dd>prediction</dd>

<dt>Lk_SP</dt>
<dd>seq pep</dd>

<dt>Lk_mTP</dt>
<dd>mit</dd>

<dt>Lk_cTP</dt>
<dd>chl</dd>

<dt>Lk_Thylak</dt>
<dd>thy</dd>

<dt>secAa</dt>
<dd>amino acid at position 2</dd>

<dt>core</dt>
<dd>core</dd>

<dt>dabase</dt>
<dd>db</dd>

<dt>acc</dt>
<dd>acc</dd>

<dt>up_id</dt>
<dd>uniprot</dd>

<dt>note</dt>
<dd>note</dd>


</dl>

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agf: Angiosperms Gymnosperms Ferns

Description

Usage

Arguments

Format